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Boolean query operator precedence:
NOT > AND > OR
(use of parenthesis or quotes n/a)
Advanced Query Examples
- Regular query for a phrase in PubMed abstracts/titles
- cell cycle arrest
- Query for multiple phrases or words in PubMed abstracts/titles
- mitotic arrest AND cdc
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Query for one of two different Gene/Protein IDs (leaving the radio button for
PubMed and Mention queries as is)
- P24941 OR Q63699 (human OR rat Cdk2)
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Search for PubMed abstracts/titles on pancreatic cancer, but not the exocrine
forms.
- pancrea AND carcinoma OR neoplasms OR cancer NOT exocrine
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Searching for interactions between proteins: Gene/Protein Mentions search,
filtered for articles containing Interaction descriptions
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brca2 AND rad51 OR dmc1 OR brca1 OR rad23a
(all known interaction partners of Brca2)
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- Notes
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Case is ignored for PubMed and Mention queries, while it is taken into account
for IDs. String matches are always made for partial words (cdc will match
Cdc25, for example). Phrases are taken as is, but stripped from whitespaces
at the ends (" cdc " is equal to "cdc") and next to boolean
operators (" mitotic arrest AND cdc ")
is equal to "mitotic arrest AND cdc") - but note that extra
whitespaces inside phrases will not be removed
("mitotic arrest" stays as is).
Contact
- Administrator/Developer
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- Institute
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CNIO - Spanish National Cancer Institute
Additional Information
- Publication
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Introducing meta-services for biomedical information extraction.
Leitner F et al., Genome Biology 2008, 9(Suppl 2):S6
- Talk BCMS at the SMBM 2008 by Florian Leitner
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The BioCreative MetaServer Platform
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